Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity

Human Reproduction

Published On 2024/1/1

STUDY QUESTION Which genetic factors regulate female propensity for giving birth to spontaneous dizygotic (DZ) twins? SUMMARY ANSWER We identified four new loci, GNRH1, FSHR, ZFPM1, and IPO8, in addition to previously identified loci, FSHB and SMAD3. WHAT IS KNOWN ALREADY The propensity to give birth to DZ twins runs in families. Earlier, we reported that FSHB and SMAD3 as associated with DZ twinning and female fertility measures. STUDY DESIGN, SIZE, DURATION We conducted a genome-wide association meta-analysis (GWAMA) of mothers of spontaneous dizygotic (DZ) twins (8265 cases, 264 567 controls) and of independent DZ twin offspring (26 252 cases, 417 433 controls). PARTICIPANTS/MATERIALS, SETTING, METHODS Over 700 000 mothers of DZ twins, twin individuals …

Journal

Human Reproduction

Volume

39

Issue

1

Page

240-257

Authors

Tim D Spector

Tim D Spector

King's College

H-Index

248

Research Interests

medicine

genetics

nutrition

microbiome

University Profile Page

Jaakko Kaprio

Jaakko Kaprio

Helsingin yliopisto

H-Index

194

Research Interests

genetic epidemiology

substance use

sleep

obesity

physical inactivity

University Profile Page

robert plomin

robert plomin

King's College

H-Index

185

Research Interests

behavioral genetics

cognitive development

University Profile Page

Matt McGue

Matt McGue

University of Minnesota-Twin Cities

H-Index

148

Research Interests

Behavioral genetics

aging

substance abuse

twins

adoption

Jouke- Jan Hottenga

Jouke- Jan Hottenga

Vrije Universiteit Amsterdam

H-Index

143

Research Interests

Genetica

University Profile Page

Patrik Magnusson

Patrik Magnusson

Karolinska Institutet

H-Index

137

Research Interests

genetics epidemiology

University Profile Page

Ken K. Ong

Ken K. Ong

University of Cambridge

H-Index

129

Research Interests

epidemiology

genetics of complex disease

paediatric endocrinology

childhood obesity

puberty timing

University Profile Page

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Jaakko Kaprio

Jaakko Kaprio

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Tim D Spector

Tim D Spector

King's College

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Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma

Multiple clinical trials targeting the gut microbiome are being conducted to optimize treatment outcomes for immune checkpoint blockade (ICB). To improve the success of these interventions, understanding gut microbiome changes during ICB is urgently needed. Here through longitudinal microbiome profiling of 175 patients treated with ICB for advanced melanoma, we show that several microbial species-level genome bins (SGBs) and pathways exhibit distinct patterns from baseline in patients achieving progression-free survival (PFS) of 12 months or longer (PFS ≥12) versus patients with PFS shorter than 12 months (PFS <12). Out of 99 SGBs that could discriminate between these two groups, 20 were differentially abundant only at baseline, while 42 were differentially abundant only after treatment initiation. We identify five and four SGBs that had consistently higher abundances in patients with PFS ≥12 and …

Tim D Spector

Tim D Spector

King's College

EBioMedicine

Enhanced resolution profiling in twins reveals differential methylation signatures of type 2 diabetes with links to its complications

BackgroundType 2 diabetes (T2D) susceptibility is influenced by genetic and environmental factors. Previous findings suggest DNA methylation as a potential mechanism in T2D pathogenesis and progression.MethodsWe profiled DNA methylation in 248 blood samples from participants of European ancestry from 7 twin cohorts using a methylation sequencing platform targeting regulatory genomic regions encompassing 2,048,698 CpG sites.FindingsWe find and replicate 3 previously unreported T2D differentially methylated CpG positions (T2D-DMPs) at FDR 5% in RGL3, NGB and OTX2, and 20 signals at FDR 25%, of which 14 replicated. Integrating genetic variation and T2D-discordant monozygotic twin analyses, we identify both genetic-based and genetic-independent T2D-DMPs. The signals annotate to genes with established GWAS and EWAS links to T2D and its complications, including blood pressure …

Jaakko Kaprio

Jaakko Kaprio

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Journal of Affective Disorders

Association between trajectories of the neighborhood social exposome and mental health in late adolescence: A FinnTwin12 cohort study

BackgroundAdolescent mental health problems impose a significant burden. Exploring evolving social environments could enhance comprehension of their impact on mental health. We aimed to depict the trajectories of the neighborhood social exposome from middle to late adolescence and assess the intricate relationship between them and late adolescent mental health.MethodsParticipants (n = 3965) from the FinnTwin12 cohort with completed questionnaires at age 17were used. Nine mental health measures were assessed. The social exposome comprised 28 neighborhood social indicators. Trajectories of these indicators from ages 12 to 17 were summarized via latent growth curve modeling into growth factors, including baseline intercept. Mixture effects of all growth factors were assessed through quantile-based g-computation. Repeated generalized linear regression identified significant growth factors …

Lambalk

Lambalk

Vrije Universiteit Amsterdam

Human Reproduction

Hysterosalpingo-foam sonography versus hysterosalpingography during fertility work-up: an economic evaluation alongside a randomized controlled trial

STUDY QUESTION What are the costs and effects of tubal patency testing by hysterosalpingo-foam sonography (HyFoSy) compared to hysterosalpingography (HSG) in infertile women during the fertility work-up? SUMMARY ANSWER During the fertility work-up, clinical management based on the test results of HyFoSy leads to slightly lower, though not statistically significant, live birth rates, at lower costs, compared to management based on HSG results. WHAT IS KNOWN ALREADY Traditionally, tubal patency testing during the fertility work-up is performed by HSG. The FOAM trial, formally a non-inferiority study, showed that management decisions based on the results of HyFoSy resulted in a comparable live birth rate at 12 months compared to HSG (46% versus 47%; difference −1.2%, 95% CI: −3.4% to 1.5%; P = 0.27). Compared to HSG, HyFoSy is …

Massimo Mangino

Massimo Mangino

King's College

medRxiv

Genome-wide characterization of circulating metabolic biomarkers

Genome-wide association analyses using high-throughput metabolomics platforms have led to novel insights into the biology of human metabolism–. This detailed knowledge of the genetic determinants of systemic metabolism has been pivotal for uncovering how genetic pathways influence biological mechanisms and complex diseases–. Here we present a genome-wide association study of 233 circulating metabolic traits quantified by nuclear magnetic resonance spectroscopy in up to 136,016 participants from 33 predominantly population-based cohorts. We discover over 400 independent loci and assign likely causal genes at two-thirds of these using detailed manual curation of highly plausible biological candidates. We highlight the importance of sample- and participant characteristics, such as fasting status and sample type, that can have significant impact on genetic associations, revealing direct and indirect associations on glucose and phenylalanine. We use detailed metabolic profiling of lipoprotein- and lipid-associated variants to better characterize how known lipid loci and novel loci affect lipoprotein metabolism at a granular level. We demonstrate the translational utility of comprehensively phenotyped molecular data, characterizing for the first time the metabolic associations of an understudied phenotype, intrahepatic cholestasis of pregnancy. Finally, we observe substantial genetic pleiotropy for multiple metabolic pathways and illustrate the importance of careful instrument selection in Mendelian randomization analysis, revealing a putative causal relationship between acetoacetate and hypertension. Our publicly available results …

2022/10/24

Article Details
Ken K. Ong

Ken K. Ong

University of Cambridge

Communications Biology

Mendelian randomization identifies circulating proteins as biomarkers for age at menarche and age at natural menopause

Age at menarche (AAM) and age at natural menopause (ANM) are highly heritable traits and have been linked to various health outcomes. We aimed to identify circulating proteins associated with altered ANM and AAM using an unbiased two-sample Mendelian randomization (MR) and colocalization approach. By testing causal effects of 1,271 proteins on AAM, we identified 22 proteins causally associated with AAM in MR, among which 13 proteins (GCKR, FOXO3, SEMA3G, PATE4, AZGP1, NEGR1, LHB, DLK1, ANXA2, YWHAB, DNAJB12, RMDN1 and HPGDS) colocalized. Among 1,349 proteins tested for causal association with ANM using MR, we identified 19 causal proteins among which 7 proteins (CPNE1, TYMP, DNER, ADAMTS13, LCT, ARL and PLXNA1) colocalized. Follow-up pathway and gene enrichment analyses demonstrated links between AAM-related proteins and obesity and diabetes, and …

John RB Perry

John RB Perry

University of Cambridge

Communications Biology

Mendelian randomization identifies circulating proteins as biomarkers for age at menarche and age at natural menopause

Age at menarche (AAM) and age at natural menopause (ANM) are highly heritable traits and have been linked to various health outcomes. We aimed to identify circulating proteins associated with altered ANM and AAM using an unbiased two-sample Mendelian randomization (MR) and colocalization approach. By testing causal effects of 1,271 proteins on AAM, we identified 22 proteins causally associated with AAM in MR, among which 13 proteins (GCKR, FOXO3, SEMA3G, PATE4, AZGP1, NEGR1, LHB, DLK1, ANXA2, YWHAB, DNAJB12, RMDN1 and HPGDS) colocalized. Among 1,349 proteins tested for causal association with ANM using MR, we identified 19 causal proteins among which 7 proteins (CPNE1, TYMP, DNER, ADAMTS13, LCT, ARL and PLXNA1) colocalized. Follow-up pathway and gene enrichment analyses demonstrated links between AAM-related proteins and obesity and diabetes, and …

Teemu Palviainen

Teemu Palviainen

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Nightmares share genetic risk factors with sleep and psychiatric traits

Nightmares are vivid, extended, and emotionally negative or negative dreams that awaken the dreamer. While sporadic nightmares and bad dreams are common and generally harmless, frequent nightmares often reflect underlying pathologies of emotional regulation. Indeed, insomnia, depression, anxiety, or alcohol use have been associated with nightmares in epidemiological and clinical studies. However, the connection between nightmares and their comorbidities are poorly understood. Our goal was to examine the genetic risk factors for nightmares and estimate correlation or causality between nightmares and comorbidities. We performed a genome-wide association study (GWAS) in 45,255 individuals using a questionnaire-based assessment on the frequency of nightmares during the past month and genome-wide genotyping data. While the GWAS did not reveal individual risk variants, heritability was …

René Pool

René Pool

Vrije Universiteit Amsterdam

The association between metabolite concentrations and wellbeing in adults

In light of major demographic trends, building and maintaining wellbeing (WB) is one of the most important societal challenges. People who feel well, function better, are less susceptible to mental illness, and thus are better able to retain competitive advantage and expand human capital. The role of genetics, and epigenetics in WB has been previously studied individually with promising results (Baselmans, Jansen, et al., 2019; Baselmans, van de Weijer, et al., 2019). However, knowledge about the effects of other omics layers is currently lacking. A potential positive association between serotonin and WB (ie, hedonic well-being) was revealed in a systematic review but the results of other molecules are not conclusive (de Vries et al., 2022). In addition, the precise interactions among these metabolites and their interplay within the context of WB are not well understood and require further investigation.

René Pool

René Pool

Vrije Universiteit Amsterdam

medRxiv

Genome-wide characterization of circulating metabolic biomarkers

Genome-wide association analyses using high-throughput metabolomics platforms have led to novel insights into the biology of human metabolism–. This detailed knowledge of the genetic determinants of systemic metabolism has been pivotal for uncovering how genetic pathways influence biological mechanisms and complex diseases–. Here we present a genome-wide association study of 233 circulating metabolic traits quantified by nuclear magnetic resonance spectroscopy in up to 136,016 participants from 33 predominantly population-based cohorts. We discover over 400 independent loci and assign likely causal genes at two-thirds of these using detailed manual curation of highly plausible biological candidates. We highlight the importance of sample- and participant characteristics, such as fasting status and sample type, that can have significant impact on genetic associations, revealing direct and indirect associations on glucose and phenylalanine. We use detailed metabolic profiling of lipoprotein- and lipid-associated variants to better characterize how known lipid loci and novel loci affect lipoprotein metabolism at a granular level. We demonstrate the translational utility of comprehensively phenotyped molecular data, characterizing for the first time the metabolic associations of an understudied phenotype, intrahepatic cholestasis of pregnancy. Finally, we observe substantial genetic pleiotropy for multiple metabolic pathways and illustrate the importance of careful instrument selection in Mendelian randomization analysis, revealing a putative causal relationship between acetoacetate and hypertension. Our publicly available results …

2022/10/24

Article Details
robert plomin

robert plomin

King's College

Nature, nurture and nonshared environment in cognitive development

One of the most important findings from behavioural genetic research is that nature, not nurture, makes children in a family similar in personality and psychopathology. The same research provides the strongest available evidence for the importance of environmental influence controlling for genetics, but it shows that environmental influences are not due to nurture; they are not shared by family members. Cognitive traits such as cognitive abilities and educational achievement are thought to be an exception, with half of the environmental variance attributed to shared environmental influences. However, most of this cognitive research has involved children. A developmental perspective indicates that shared environmental influence on cognitive abilities and educational achievement declines from accounting for 20-30% of the variance in childhood to 10-20% in adolescence and to 0% by early adulthood. Educational attainment (years of schooling) is the exception with lasting shared environmental influence (30%) driven by decisions made in adolescence to go to university, which shows the greatest shared environmental influence (47%). We conclude that environmental influences on individual differences in cognitive development are, in the long run, nonshared. We discuss the far-reaching scientific and societal implications of these findings for understanding the nonshared environmental causes of individual differences in cognitive abilities in adulthood.

conor v dolan

conor v dolan

Vrije Universiteit Amsterdam

International Journal of Behavioral Nutrition and Physical Activity

Genetic confounding in the association of early motor development with childhood and adolescent exercise behavior

IntroductionEarly motor development has been found to be a predictor of exercise behavior in children and adolescents, but whether this reflects a causal effect or confounding by genetic or shared environmental factors remains to be established.MethodsFor 20,911 complete twin pairs from the Netherlands Twin Register a motor development score was obtained from maternal reports on the timing of five motor milestones. During a 12-year follow-up, subsamples of the mothers reported on the twins’ ability to perform seven gross motor skills ability (N = 17,189 pairs), and weekly minutes of total metabolic equivalents of task (MET) spent on sports and exercise activities at age 7 (N = 3632 pairs), age 10 (N = 3735 pairs), age 12 (N = 7043 pairs), and age 14 (N = 3990 pairs). Multivariate phenotypic and genetic regression analyses were used to establish the predictive strength of the two motor development …

Jenny van Dongen

Jenny van Dongen

Vrije Universiteit Amsterdam

medRxiv

Intergenerational transmission of complex traits and the offspring methylome

The genetic makeup of parents can directly or indirectly affect their offspring phenome through genetic transmission or via the environment that is influenced by parental heritable traits. Our understanding of the mechanisms by which indirect genetic effects operate is limited. Here, we hypothesize that one mechanism is via the offspring methylome. To test this hypothesis polygenic scores (PGSs) for schizophrenia, smoking initiation, educational attainment (EA), social deprivation, body mass index (BMI), and height were analyzed in a cohort of 1,528 offspring and their parents (51.5% boys, mean [SD] age = 10 [2.8] years). We modelled parent and offspring PGSs on offspring DNA methylation, accounting for the own PGS of offspring, and found significant associations between parental PGSs for schizophrenia, EA, BMI, and height, and offspring methylation sites, comprising 16, 2, 1, and 6 sites, respectively (alpha = 2.7 x 10−5). More DNA methylation sites were associated with maternal than paternal PGSs, possibly reflecting the maternal pre- or periconceptional environment during critical embryonic development.

Jaakko Kaprio

Jaakko Kaprio

Helsingin yliopisto

medRxiv

Twin study provides heritability estimates for 2,321 plasma proteins and assesses missing SNP heritability

Assessing how much of the variability in blood plasma proteins is due to genetic or environmental factors is essential for advancing personalized medicine. While large-scale studies have established SNP-based heritability (SNP-h2) estimates for plasma proteins, less is known about the proportion of total genetic effects on protein variability. We applied quantitative genetic twin models to estimate the heritability of 2,321 plasma proteins and to assess the proportion of heritability accounted for by SNP-h2 estimates. Olink proteomics data were generated for 401 twins aged 56-70, including 196 complete same-sex twin pairs. On average, 40% of protein variability was attributable to genetic effects. Twin-based heritability estimates were highly correlated with published SNP-h2 estimates from the UK Biobank (Spearman coefficient: r=0.80). However, on average, only half of the total heritability was covered by SNP-h2, and the other half, representing one-fifth of total protein phenotypic variability, remains missing.

robert plomin

robert plomin

King's College

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Human Reproduction

Reply. Beyond the plate: exploring the complexities of using dietary approaches to manage endometriosis

We thank Dr Rao et al.(2024) for their compliments on our study titled ‘The effect of dietary interventions on pain and quality of life in women diagnosed with endometriosis: a prospective study with control group’(van Haaps et al., 2023) as well as for their knowledgeable comments (Rao et al., 2024). We have carefully considered their comments, one of which was that we did not investigate or exclude other self-management strategies, such as the use of CBD oil but also yoga and relaxation exercises. While some studies have suggested the effectiveness of yoga in managing endometriosis-related symptoms and quality of life (QoL)(Goncalves et al., 2016; Armour et al., 2019) found that yoga was inferior for endometriosis management, when compared to dietary interventions. Therefore, our main research focus was specifically set on dietary interventions. While we decided not to include other self-management …

Andrea Graziani

Andrea Graziani

Università degli Studi di Torino

Human Reproduction

A cryptozoospermic infertile male with Y chromosome AZFc microdeletion and low FSH levels due to a simultaneous polymorphism in the FSHB gene: a case report

Genetic causes account for 10–15% of male factor infertility, making the genetic investigation an essential and useful tool, mainly in azoospermic and severely oligozoospermic men. In these patients, the most frequent findings are chromosomal abnormalities and Y chromosome long arm microdeletions, which cause a primary severe spermatogenic impairment with classically increased levels of FSH. On the other hand, polymorphisms in the FSH receptor (FSHR) and FSH beta chain (FSHB) genes have been associated with different FSH plasma levels, due to variations in the receptor sensitivity (FSHR) or in the production of FSH from the pituitary gland (FSHB). Here, we describe an unusual patient with a combined genetic alteration (classic AZFc deletion of the Y chromosome and TT homozygosity for the -211G>T polymorphism in the FSHB gene (rs10835638)), presenting with cryptozoospermia, severe …

Tobias Österlund

Tobias Österlund

Chalmers tekniska högskola

Human Reproduction

Genomic alterations in ovarian endometriosis and subsequently diagnosed ovarian carcinoma

STUDY QUESTION Can the alleged association between ovarian endometriosis and ovarian carcinoma be substantiated by genetic analysis of endometriosis diagnosed prior to the onset of the carcinoma? SUMMARY ANSWER The data suggest that ovarian carcinoma does not originate from ovarian endometriosis with a cancer-like genetic profile; however, a common precursor is probable. WHAT IS KNOWN ALREADY Endometriosis has been implicated as a precursor of ovarian carcinoma based on epidemiologic studies and the discovery of common driver mutations in synchronous disease at the time of surgery. Endometrioid ovarian carcinoma and clear cell ovarian carcinoma are the most common endometriosis-associated ovarian carcinomas (EAOCs). STUDY DESIGN, SIZE, DURATION The pathology biobanks of two …

Gang Zhao

Gang Zhao

University of Science and Technology of China

Human Reproduction

Improving vitrification efficiency of human in vitro matured oocytes by the addition of LEA proteins

STUDY QUESTION Can the addition of late embryogenesis-abundant (LEA) proteins as a cryoprotective agent during the vitrification cryopreservation of in vitro matured oocytes enhance their developmental potential after fertilization? SUMMARY ANSWER LEA proteins improve the developmental potential of human in vitro matured oocytes following cryopreservation, mostly by downregulating FOS genes, reducing oxidative stress, and inhibiting the formation of ice crystals. WHAT IS KNOWN ALREADY Various factors in the vitrification process, including cryoprotectant toxicity, osmotic stress, and ice crystal formation during rewarming, can cause fatal damage to oocytes, thereby affecting the oocytes developmental potential and subsequent clinical outcomes. Recent studies have shown that LEA proteins possess high hydrophilicity and inherent stress …

Eva Krapohl

Eva Krapohl

King's College London

Human Reproduction

Genome-wide association study meta-analysis of dizygotic twinning illuminates genetic regulation of female fecundity

STUDY QUESTION Which genetic factors regulate female propensity for giving birth to spontaneous dizygotic (DZ) twins? SUMMARY ANSWER We identified four new loci, GNRH1, FSHR, ZFPM1, and IPO8, in addition to previously identified loci, FSHB and SMAD3. WHAT IS KNOWN ALREADY The propensity to give birth to DZ twins runs in families. Earlier, we reported that FSHB and SMAD3 as associated with DZ twinning and female fertility measures. STUDY DESIGN, SIZE, DURATION We conducted a genome-wide association meta-analysis (GWAMA) of mothers of spontaneous dizygotic (DZ) twins (8265 cases, 264 567 controls) and of independent DZ twin offspring (26 252 cases, 417 433 controls). PARTICIPANTS/MATERIALS, SETTING, METHODS Over 700 000 mothers of DZ twins, twin individuals …

Abigail Fraser

Abigail Fraser

University of Bristol

Human Reproduction

Impaired glucose tolerance and cardiovascular risk factors in relation to infertility: a Mendelian randomization analysis in the Norwegian Mother, Father, and Child Cohort Study

STUDY QUESTION Are impaired glucose tolerance (as measured by fasting glucose, glycated hemoglobin, and fasting insulin) and cardiovascular disease risk (as measured by low-density lipoprotein cholesterol, high-density lipoprotein cholesterol, triglycerides, systolic blood pressure, and diastolic blood pressure) causally related to infertility? SUMMARY ANSWER Genetic instruments suggest that higher fasting insulin may increase infertility in women. WHAT IS KNOWN ALREADY Observational evidence suggests a shared etiology between impaired glucose tolerance, cardiovascular risk, and fertility problems. STUDY DESIGN, SIZE, DURATION This study included two-sample Mendelian randomization (MR) analyses, in which we used genome-wide association summary data that were publicly available for the biomarkers of …